PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g03150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 214aa    MW: 23682.8 Da    PI: 6.0311
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g03150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB144.42.7e-451811797
           NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                    mk++lP nakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk+yl++yre+egek
  Vang10g03150.1  1 MKRALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEK 81
                    9******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.1E-43196IPR009072Histone-fold
PfamPF008082.3E-20155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.69E-33199IPR009072Histone-fold
PRINTSPR006151.8E-181937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-183856No hitNo description
PRINTSPR006151.8E-185775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKRALPPNAK ISKEAKETVQ ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF  60
ENYVGPLKLY LNNYRETEGE KSSMAKQEEH SPTHQTNDGL PELNKLPHSS ATKPDFNSFT  120
AGFYSVGPQL TPPKSFTDIG GINGYRETSM NSVIAQSAVS ADQDASVLVF ILWHESSVEG  180
NIGLRSYLVR LKILMQKDNG LHLLLLRAVE EVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-371761792Transcription factor HapC (Eurofung)
4g92_B5e-371761792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507731.11e-121PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBLA0A0L9TJC31e-122A0A0L9TJC3_PHAAN; Uncharacterized protein
STRINGGLYMA05G31681.11e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-50nuclear factor Y, subunit B3